Efficient R package implementing the algorithms for dynamic (longitudinal) co-expression network estimation from repeatedly measured (protein, microbe, etc) counts.

Julia package Bayesian regression framework for network covariates, developed for identifying microbial drivers of biological phenotypes.

Open-source, publicly available web app for unsupervised and semi-supervised learning, built with a team of undergraduates for cases where sequence alignment or full phenotyping isn't possible.